Table 4 Identity percentages between the detected RdRp nucleotide sequences and those of AIBV, MHV, BCoV, WESV, and HKU10. Sequences pairs with high nucleotide identity are highlighted in bold
From: Detection of avian, murine, bovine, shrew, and bat coronaviruses in wild mammals from Mexico
Detected RdRp nucleotide sequence identity | Fallow deer (PQ243315) | Fallow deer (PQ243316) | Llama (PQ243317) | Spider monkey (PQ243318) | Mouflon (PQ243319) | Mouflon (PQ243321) | Dwarf goat (PQ243320) | Dwarf goat (PQ243323) | Pony (PQ243322) | AIBV H120 (MN548287.1) | MHV A59 (NC_048217.1) | BCoV E-AH65-TCÂ (EF424616.1) | WESV Xingguo-74Â (NC_048211.1) | HKU10 183A (NC_018871.1) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Fallow deer (PQ243315) | 100% | 99.71% | 99.71% | 97.98% | 99.42% | 21.8% | 25.03% | 30.94% | 36.5% | 100% | 14.14% | 26.61% | 34.28% | 36.02% |
Fallow deer (PQ243316) | 99.71% | 100% | 99.71% | 98.27% | 99.71% | 21.04% | 24.6% | 30.74% | 36.86% | 99.71% | 14.37% | 27.07% | 35.42% | 35.45% |
Llama (PQ243317) | 99.71% | 99.71% | 100% | 97.98% | 99.42% | 21.42% | 24.76% | 31.14% | 36.86% | 99.71% | 13.91% | 26.32% | 35.88% | 34.58% |
Spider monkey (PQ243318) | 97.98% | 98.27% | 97.98% | 100% | 97.98% | 21.25% | 24.33% | 32.53% | 36.86% | 97.98% | 14.48% | 26.78% | 37.56% | 36.31% |
Mouflon (PQ243319) | 99.42% | 99.71% | 99.42% | 97.98% | 100% | 21.17% | 24.73% | 31.14% | 36.56% | 99.42% | 14.37% | 27.22% | 35.42% | 35.16% |
Mouflon (PQ243321) | 21.8% | 21.04% | 21.42% | 21.25% | 21.17% | 100% | 36.92% | 62.85% | 19.97% | 24.26% | 98.98% | 35.96% | 40.1% | 17.6% |
Dwarf goat (PQ243320) | 25.03% | 24.6% | 24.76% | 24.33% | 24.73% | 36.92% | 100% | 33.43% | 67.55% | 26.61% | 37.85% | 99.73% | 32.05% | 23.96% |
Dwarf goat (PQ243323) | 30.94% | 30.74% | 31.14% | 32.53% | 31.14% | 62.85% | 33.43% | 100% | 42.24% | 35.96% | 63.05% | 33.43% | 98.99% | 25.96% |
Pony (PQ243322) | 36.5% | 36.86% | 36.86% | 36.86% | 36.56% | 19.97% | 67.55% | 42.24% | 100% | 35.45% | 20.27% | 67.17% | 42.57% | 98.49% |
AIBV H120 (MN548287.1) | 100% | 99.71% | 99.71% | 97.98% | 99.42% | 24.26% | 26.61% | 35.96% | 35.45% | 100% | 14.14% | 26.61% | 34.28% | 36.02% |
MHV A59 (NC_048217.1) | 14.14% | 14.37% | 13.91% | 14.48% | 14.37% | 98.98% | 37.85% | 63.05% | 20.27% | 14.14% | 100% | 36.81% | 40.23% | 18.24% |
BCoV E-AH65-TCÂ (EF424616.1) | 26.61% | 27.07% | 26.32% | 26.78% | 27.22% | 35.96% | 99.73% | 33.43% | 67.17% | 26.61% | 36.81% | 100% | 31.79% | 23.82% |
WESV Xingguo-74Â (NC_048211.1) | 34.28% | 35.42% | 35.88% | 37.56% | 35.42% | 40.1% | 32.05% | 98.99% | 42.57% | 34.28% | 40.23% | 31.79% | 100% | 26.16% |
HKU10 183A (NC_018871.1) | 36.02% | 35.45% | 34.58% | 36.31% | 35.16% | 17.6% | 23.96% | 25.96% | 98.49% | 36.02% | 18.24% | 23.82% | 26.16% | 100% |