Table 3 RT-PCR positive samples for orthocoronaviruses (AIBV, MHV, BCoV, WESV, and HKU10), accession numbers of the detected sequences, genus, species, name, acronym, and strain of the identified viruses
From: Detection of avian, murine, bovine, shrew, and bat coronaviruses in wild mammals from Mexico
Animal | Positive samples | Accession number | Isolation | Strain name | Virus name (NCBI Taxonomy ID) | Virus acronym | Species | Genus | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
Feces | Rectal swab | Oral swab | Nasal swab | ||||||||
Fallow deer | 18.18% (2/11) | 18.18% (2/11) | 0% (0/11) | 0% (0/11) | PQ243315 PQ243316 | No | H120 | Avian infectious bronchitis virus (NCBI:txid11120) | AIBV | Avian coronavirus | Gammacoronavirus |
Llama | 50% (1/2) | 50% (1/2) | 0% (0/2) | 0% (0/2) | PQ243317 | Yes | H120 | Avian infectious bronchitis virus (NCBI:txid11120) | AIBV | Avian coronavirus | Gammacoronavirus |
Spider monkey | 100% (1/1) | 100% (1/1) | 0% (0/1) | 0% (0/1) | PQ243318 | Yes | H120 | Avian infectious bronchitis virus (NCBI:txid11120) | AIBV | Avian coronavirus | Gammacoronavirus |
Mouflon | 6.3% (1/16) | 6.3% (1/16) | 0% (0/16) | 0% (0/16) | PQ243319 | Yes | H120 | Avian infectious bronchitis virus (NCBI:txid11120) | AIBV | Avian coronavirus | Gammacoronavirus |
Mouflon | 6.3% (1/16) | 6.3% (1/16) | 0% (0/16) | 0% (0/16) | PQ243321 | No | A59 | Murine hepatitis virus (NCBI:txid11138) | MHV | Murine coronavirus | Betacoronavirus |
Dwarf goat | 3.8% (1/26) | 3.8% (1/26) | 0% (0/26) | 0% (0/26) | PQ243320 | No | E-AH65-TC | Bovine coronavirus (NCBI:txid422218) | BCoV | Betacoronavirus 1 | Betacoronavirus |
Dwarf goat | 3.8% (1/26) | 3.8% (1/26) | 0% (0/26) | 0% (0/26) | PQ243323 | No | Xingguo-74 | Wencheng Sm shrew coronavirus (NCBI:txid1508228) | WESV | Unclassified | Alphacoronavirus |
Pony | 0% (0/1) | 0% (0/1) | 100% (1/1) | 0% (0/1) | PQ243322 | No | 183A | Rousettus bat coronavirus HKU10 (NCBI:txid1241933) | HKU10 | Bat coronavirus HKU10 | Alphacoronavirus |