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Table 3 Recent ACoV isolates data used for partial and full-length spike glycoprotein S1 gene sequencing analysis

From: A full-length S1 gene sequencing of a novel emerged GI-19 and GI-23 lineages of Infectious bronchitis virus currently circulating in chicken flocks in upper Egypt reveals marked genetic diversity and recombination events

No

Isolate identification

Accession No

Genotype

Flock type and location

1

Assuit-1-QX-EGYIBV-2024a

PQ093635

GI-19

Layers, and broilers, Assuit governorate

2

Assuit-2-QX-EGYIBV-2024a

PQ093636

GI-19

Layers, and broilers, Assuit governorate

3

NewValley-1-EGYIBV-GI23-2023b

PQ093637

GI-23

Broilers, New Valley governorate

4

Minya-2-EGYIBV-GI23-2024b

PQ093638

GI-23

Breeders, El-Mina governorate

5

BeniSeuf-3-EGYIBV-GI23-2024b

PQ093639

GI-23

Broilers, BeniSeuf governorate

6

Sohag-EGYIBV-1-GI1-2023

PQ093640

GI-1

Breeders, Sohag governorate

7

Assuit-1-EGYIBV-GI23-2023

PQ093641

GI-23

Breeders, Assuit governorate

8

Assuit-2-EGYIBV-GI23-2023

PQ093642

GI-23

Broilers, Assuit governorate

9

Assuit-3-EGYIBV-GI23-2023

PQ093643

GI-23

Breeders, Assuit governorate

10

Sohag-4-EGYIBV-GI23-2023

PQ093644

GI-23

Broilers, Sohag governorate

11

Sohag-5-EGYIBV-GI23-2023

PQ093645

GI-23

Broilers, Sohag governorate

12

NewValley-6-EGYIBV-GI23-2023

PQ093646

GI-23

Broilers, New Valley governorate

13

NewValley-7-EGYIBV-GI23-2023

PQ093647

GI-23

Broilers, New Valley governorate

14

Mina-8-EGYIBV-GI23-2023

PQ093648

GI-23

Breeders, El-Mina governorate

15

Mina-9-EGYIBV-GI23-2023

PQ093649

GI-23

Broilers, El-Mina governorate

16

Beniseuf-10-EGYIBV-GI23-2023

PQ093650

GI-23

Broilers, Beni-seuf governorate

17

Beniseuf-11-EGYIBV-GI23-2023

PQ093651

GI-23

Breeders, Beni-seuf governorate

18

NewValley-12-EGYIBV-GI23-2024

PQ093652

GI-23

Broilers, New Valley governorate

19

Sohag-13-EGYIBV-GI23-2024

PQ093653

GI-23

Breeders, Sohag governorate

20

Aswan-14-EGYIBV-GI23-2024

PQ093654

GI-23

Broilers, Aswan governorate

21

Aswan-15-EGYIBV-GI23-2024

PQ093655

GI-23

Broilers, Aswan governorate

22

Assuit-1-EGYIBV-GI12-D274-2023

PQ093656

GI-12

Breeders, Assuit governorate

23

Sohag-/GI-12/D274-35/2023

PQ093657

GI-12

Broilers, Sohag governorate

  1. Our twenty-three Egyptian isolates are presented as follows: Bold isolates 1–2 are clustered as GI-19, bold isolates 3–5 are clustered as GI-23, Isolate 6 is clustered as GI-1 Isolates, 7–21 are clustered as GI-23, and finally isolates 22–23 are clustered as GI-12. Subsequently, a: S1 gene of IBV-GI-19 isolates (full sequencing). b: S1 gene of IBV-GI-23 isolates (full sequencing)
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Virology Journal

ISSN: 1743-422X