3D structure prediction | Robetta | https://robetta.bakerlab.org/submit.php |
Swiss-Model | https://swissmodel.expasy.org/interactive |
I-TASSER | https://zhanggroup.org/I-TASSER/ |
AlphaFold | https://colab.research.google.com/github/deepmind/alphafold/blob/main/notebooks/AlphaFold.ipynb |
LOMETS3 | https://zhanggroup.org/LOMETS/ |
Phyre2 | http://www.sbg.bio.ic.ac.uk/~phyre2/html/page.cgi?id=index |
CEthreader | https://zhanggroup.org/CEthreader/ |
C-QUARK | https://zhanggroup.org/C-QUARK/ |
Model Refinement | DeepRefiner | http://watson.cse.eng.auburn.edu/DeepRefiner/index.php |
Galaxy WEB | https://galaxy.seoklab.org/cgi-bin/submit.cgi?type=REFINE |
trRossetta | https://yanglab.nankai.edu.cn/ |
Modrefiner | https://zhanggroup.org/ModRefiner/ |
PREFMD | http://feig.bch.msu.edu/prefmd |
3Drefine | https://3drefine.mu.hekademeia.org/ |
ReFOLD | https://www.reading.ac.uk/bioinf/ReFOLD/ |
Model Evaluation | SAVES | https://saves.mbi.ucla.edu/ |
PROCHECK | https://www.ebi.ac.uk/thornton-srv/software/PROCHECK/ |
TM-Score | https://zhanggroup.org/TM-score/ |
TM-align | https://zhanggroup.org/TM-align/ |
QMEAN | https://swissmodel.expasy.org/qmean/ |
Structure Assessment | https://swissmodel.expasy.org/assess |
