Table 1 List of cassava samples used in the study with details on previous virus detections
Samples | Origin/Site | Collection date | Virus name (Acronyme) | Taxonomic name | Genome | Family/Genus | Virus detection | References |
|---|---|---|---|---|---|---|---|---|
Healthy vitroplant | Reunion Island/ Saint-Pierre | 20/01/2022 | – | – | – | – | – | – |
293MG040711 | Madagascar/Diana | 04/07/2011 | African cassava mosaic virus (ACMV) | Begomovirus manihotis | ssDNA | Geminiviridae/Begomovirus | PCR / Direct Sanger Sequencing | Harimalala et al., 2015 |
East African cassava mosaic Cameroon virus (EACMCV) | Begomovirus manihotiscameroonense | PCR / Direct Sanger Sequencing | ||||||
East African cassava mosaic Kenya virus (EACMKV) | Begomovirus manihotiskenyaense | PCR / Direct Sanger Sequencing | ||||||
HAY1.3 | Comoros/Havrara | 15/09/2016 | Cassava brown streak virus (CBSV) | Ipomovirus brunusmanihotis | ssRNA | Potyviridae/Ipomovirus | RT-PCR / Direct Sanger Sequencing | Azali et al., 2017 |
6 mois Blanc | Mayotte/Dembeni | 26/03/2015 | East African cassava mosaic virus (EACMV) | Begomovirus manihotisafricaense | ssDNA | Geminiviridae/Begomovirus | dsRNAs | Kwibuka et al., 2021 |
Manihot esculenta-associated virus 1 (MEaV-1) | na | ssRNA | Closteroviridae/Ampelovirus | |||||
Manihot esculenta-associated virus 2 (MEaV-2) | na | ssRNA | Closteroviridae/Ampelovirus | |||||
CRE11 | Reunion Island/ Bassin Plat | 25/02/2015 | Manihot esculenta-associated virus 1 (MEaV-1) | na | ssRNA | Closteroviridae/Ampelovirus | dsRNAs | Kwibuka et al., 2021 |
HEL 3.1 | Comoros/Helindje | 15/09/2016 | Ugandan cassava brown streak virus (UCBSV) | Ipomovirus manihotis | ssRNA | Potyviridae/Ipomovirus | RT-PCR / Direct Sanger Sequencing | Azali et al., 2017 |