Fig. 3

Phylogenetic analysis of the novel wild-type CHV complete genome sequence. A Phylogenetic placement of the wild-type autochthonous CHV (PP349830) among the 22 complete CHV sequences from the GenBank database. The wild-type CHV is highlighted in pink. Tips are labeled with GenBank accession numbers, collection locations, and dates. B Local similarity plot of PP349830 vs representative context sequences (KX828242, MW353130, MW353131, MW353136 and MW353138) along the length of the genome sequence. Context sequences shown were chosen to most representatively sample CHV genome diversity as represented by the phylogenetic tree (A). Local hamming similarities versus target sequences were computed in sliding windows (length = 1000 nt, step = 100)