A retrospective study revealing complex viral diversity and a substantial burden of HPV infection in SARS-CoV-2 positive individuals, Sierra Leone

Table 2 HPV identified in 19 nasopharyngeal swab samples and their characteristics

ID	HPV type^a	HPV unclassified^a	Multiple infection	HPV genotype	Age	Gender	Collection district	Residence place
m002	HPV-49		1	Betapapillomavirus	Unknown	Female	Western Area Urban	Unknown
m006		HPV-mm292c88nr	1	Betapapillomavirus	34	Male	Western Area Urban	Freetown
m100	HPV-24	HPV-mSK043nr	2	Betapapillomavirus	39	Male	Port Loko	Kaffubullom
m104	HPV-47		1	Betapapillomavirus	31	Female	Moyamba	Kaiyamba
m108	HPV-188/195		2	Beta & Gamma	22	Female	Western Area Urban	Freetown
m133	HPV-14		1	Betapapillomavirus	Unknown	Female	Western Area Urban	Freetown
m139	HPV-21/22/80/98/146/168/197	HPV-mdo1c232nr/mEV03c05nr/mEV03c212nr/mSK061nr/mSK206nr/mTVMBSHc33nr	13	Beta & Gamma	1	Male	Western Area Urban	Freetown
m140	HPV-47		1	Betapapillomavirus	29	Female	Western Area Rural	Freetown
m142		HPV-mFS1nr	1	Gammapapillomavirus	51	Female	Western Area Urban	Freetown
m145	HPV-21	HPV-mm292c88nr	2	Betapapillomavirus	52	Male	Western Area Urban	Unknown
m147	HPV-22/80/197	HPV-mEV03c212nr/mSK061nr/mSK206nr	6	Beta & Gamma	54	Male	Western Area Urban	Freetown
m148	HPV-22		1	Betapapillomavirus	46	Male	Western Area Urban	Unknown
m150	HPV-5/75/174		3	Betapapillomavirus	Unknown	Unknown	Western Area Urban	Freetown
m152	HPV-5/80		2	Betapapillomavirus	41	Female	Western Area Urban	Freetown
m163	HPV-14/93/115/122/152/196/206/222		8	Beta & Gamma	23	Male	Western Area Urban	Freetown
m183		HPV-mHIVGc36nr	1	Betapapillomavirus	44	Male	Western Area Urban	Unknown
m190	HPV-182		1	Betapapillomavirus	37	Male	Western Area Urban	Freetown
m191		HPV-mEV03c212nr	1	Gammapapillomavirus	32	Female	Western Area Urban	Freetown
m192	HPV-174		1	Betapapillomavirus	33	Male	Western Area Urban	Freetown

^aMost putative genomes or L1 gene identity to classified or unclassified HPV genome > 90%, defined as new variant or subtypes of HPVs. The HPV type is represented in the table by the closest identity classified or unclassified HPV genome

ISSN: 1743-422X