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Table 1 Overview of sequencing results

From: Characterizing the splice map of Turkey Hemorrhagic Enteritis Virus

Metric

4 h.p.i

12 h.p.i

24 h.p.i

72 h.p.i

Total

Total reads

1.17e + 08

7.63e + 07

1.20e + 08

1.15e + 08

4.28e + 08

Mapped

(Host)

1.04e + 08

(89.06%)

6.79e + 07

(89.0393%)

1.06e + 08

(88.2719%)

8.38e + 07

(72.9802%)

3.62e + 08

Mapped

(THEV)

4.32e + 02

( 0.0004%)

6.70e + 03

( 0.0088%)

1.18e + 06

( 0.9841%)

1.69e + 07

(14.6904%)

1.81e + 07

Mean Per Base

Coverage/Depth

2.42

37.71

6,666.96

95,041.7

101,749

Total unique

splice junctions

13

37

236

2,374

2,457

Junction coverage

Total (at least 1 read)

37

605

115,075

2.13e + 06

2.25e + 06

Junction coverage

Mean reads

2.8

16.4

487.6

898.4

351.3

Junction coverage

(at least 10 reads)

0

13

132

1,791

1,936

Junction coverage

(at least 100 reads)

0

1

53

805

859

Junction coverage

(at least 1000 reads)

0

0

18

168

186