From: Characterizing the splice map of Turkey Hemorrhagic Enteritis Virus
Metric | 4Â h.p.i | 12Â h.p.i | 24Â h.p.i | 72Â h.p.i | Total |
---|---|---|---|---|---|
Total reads | 1.17e + 08 | 7.63e + 07 | 1.20e + 08 | 1.15e + 08 | 4.28e + 08 |
Mapped (Host) | 1.04e + 08 (89.06%) | 6.79e + 07 (89.0393%) | 1.06e + 08 (88.2719%) | 8.38e + 07 (72.9802%) | 3.62e + 08 |
Mapped (THEV) | 4.32e + 02 ( 0.0004%) | 6.70e + 03 ( 0.0088%) | 1.18e + 06 ( 0.9841%) | 1.69e + 07 (14.6904%) | 1.81e + 07 |
Mean Per Base Coverage/Depth | 2.42 | 37.71 | 6,666.96 | 95,041.7 | 101,749 |
Total unique splice junctions | 13 | 37 | 236 | 2,374 | 2,457 |
Junction coverage Total (at least 1 read) | 37 | 605 | 115,075 | 2.13e + 06 | 2.25e + 06 |
Junction coverage Mean reads | 2.8 | 16.4 | 487.6 | 898.4 | 351.3 |
Junction coverage (at least 10 reads) | 0 | 13 | 132 | 1,791 | 1,936 |
Junction coverage (at least 100 reads) | 0 | 1 | 53 | 805 | 859 |
Junction coverage (at least 1000 reads) | 0 | 0 | 18 | 168 | 186 |