Table 3 Comparative analysis of quality control and observed mutations in the same individual after using both nucleic acid sources (RDT strip and VTM)
Sample | 38111* | 38126 | 38133 | 38157 | 38160 | 38162 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
RDT strip | RDT strip | VTM | RDT strip | VTM | RDT strip | VTM | RDT strip | VTM | RDT strip | VTM | |
Coverage (%) | 95 | 96 | 95 | 99 | 99 | 99 | 99.7 | 94 | 82 | 92 | 99.7 |
QC overall score | 17 | 26 | 11 | 0 | 0 | 0 | 0 | 91 | 268 | 55 | 0 |
Total missing | 1437 | 124 | 1217 | 126 | 240 | 253 | 1903 | 1903 | 4719 | 231 | 62 |
Deletion | 18 | 24 | 6 | 27 | 30 | 24 | 18 | 43 | 9 | 9 | 6 |
Substitution | 69 | 71 | 66 | 78 | 78 | 76 | 76 | 66 | 62 | 62 | 80 |
Reverse private mutation | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Labeled private mutation | 1 | 2 | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Unlabeled private mutation | 2 | 3 | 1 | 2 | 2 | 1 | 2 | 4 | 5 | 5 | 5 |
Variant | BA.5.2.1 | BA.5.2 | BA.5.2.1 | BQ.1.1 | BQ.1.1 | BQ.1.1 | BQ.1.1 | BQ.1.1 | BQ.1.1 | BQ.1.1 | BQ.1.1 |